add r-clipper

1 files changed, 45 insertions, 0 deletions

diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..38ff3b71ab46
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,45 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=clipper
+_pkgver=1.36.0
+pkgname=r-${_pkgname,,}
+pkgver=1.36.0
+pkgrel=1
+pkgdesc='Gene Set Analysis Exploiting Pathway Topology'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('AGPL')
+depends=(
+  r
+  r-biobase
+  r-corpcor
+  r-graph
+  r-grbase
+  r-igraph
+  r-kegggraph
+  r-qpgraph
+  r-rbgl
+  r-rcpp
+)
+optdepends=(
+  r-all
+  r-biocgenerics
+  r-biocstyle
+  r-graphite
+  r-hgu95av2.db
+  r-mass
+  r-rcy3
+  r-runit
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('dcff9a08819835ebf5c1cdc6d260329ca7c77de94dea9d9c4741b7ab83e74ce8')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: