add r-compass

1 files changed, 55 insertions, 0 deletions

diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..ebcca684f940
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,55 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=COMPASS
+_pkgver=1.34.0
+pkgname=r-${_pkgname,,}
+pkgver=1.34.0
+pkgrel=1
+pkgdesc='Combinatorial Polyfunctionality Analysis of Single Cells'
+arch=('x86_64')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('Artistic2.0')
+depends=(
+  r
+  r-abind
+  r-biocstyle
+  r-clue
+  r-coda
+  r-data.table
+  r-dplyr
+  r-foreach
+  r-knitr
+  r-magrittr
+  r-pdist
+  r-plyr
+  r-rcolorbrewer
+  r-rcpp
+  r-reshape2
+  r-rlang
+  r-rmarkdown
+  r-scales
+  r-tidyr
+)
+optdepends=(
+  r-devtools
+  r-flowcore
+  r-flowworkspace
+  r-flowworkspacedata
+  r-ggplot2
+  r-ncdfflow
+  r-progress
+  r-shiny
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('1c684916757374422c2adfd04dbb8a424e7a04ec9fb2eb5a9e5efe855ada6245')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: