add r-conclus

1 files changed, 59 insertions, 0 deletions

diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..d06ff5aef2ab
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,59 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=conclus
+_pkgver=1.3.3
+pkgname=r-${_pkgname,,}
+pkgver=1.3.3
+pkgrel=1
+pkgdesc='ScRNA-seq Workflow CONCLUS - From CONsensus CLUSters To A Meaningful CONCLUSion'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-annotationdbi
+  r-biobase
+  r-biocfilecache
+  r-biomart
+  r-clusterprofiler
+  r-dbscan
+  r-doparallel
+  r-dplyr
+  r-factoextra
+  r-foreach
+  r-fpc
+  r-geoquery
+  r-ggplot2
+  r-gridextra
+  r-pheatmap
+  r-rtsne
+  r-scales
+  r-scater
+  r-scran
+  r-singlecellexperiment
+  r-stringr
+  r-summarizedexperiment
+  r-org.mm.eg.db
+  r-org.hs.eg.db
+)
+optdepends=(
+  r-biocstyle
+  r-dynamictreecut
+  r-knitr
+  r-matrixstats
+  r-rmarkdown
+  r-s4vectors
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('469178ed2a313a6f39fd8306b4470601b691edbcd0acfd896d4019c7c304f9d1')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: