diff options
| author | Sukanka | 2022-06-06 07:26:25 +0800 |
|---|---|---|
| committer | Sukanka | 2022-06-06 07:26:25 +0800 |
| commit | 5025d25c0c297cd4790dd7dff891036eb38a56c6 (patch) | |
| tree | f2aae2d737360558a8cce818bd85167664430012 /PKGBUILD | |
| download | aur-5025d25c0c297cd4790dd7dff891036eb38a56c6.tar.gz | |
add r-ctrap
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 63 |
1 files changed, 63 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..14b6ec715d8b --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,63 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=cTRAP +_pkgver=1.14.0 +pkgname=r-${_pkgname,,} +pkgver=1.14.0 +pkgrel=1 +pkgdesc='Identification of candidate causal perturbations from differential gene expression data' +arch=('any') +url="https://bioconductor.org/packages/${_pkgname}" +license=('MIT') +depends=( + r + r-annotationdbi + r-annotationhub + r-binr + r-cowplot + r-data.table + r-dplyr + r-dt + r-fastmatch + r-fgsea + r-ggplot2 + r-ggrepel + r-highcharter + r-htmltools + r-httr + r-limma + r-pbapply + r-purrr + r-qs + r-r.utils + r-readxl + r-reshape2 + r-rhdf5 + r-rlang + r-scales + r-shiny + r-shinycssloaders + r-tibble +) +optdepends=( + r-biomart + r-covr + r-knitr + r-remotes + r-rmarkdown + r-spelling + r-testthat +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('5ad5abc39a907eadb8458b371dc34a26b3042fa880c6b8d9e569c6eb026bb38e') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" + install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}" +} +# vim:set ts=2 sw=2 et: |