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author | Sukanka | 2022-06-06 07:36:31 +0800 |
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committer | Sukanka | 2022-06-06 07:36:31 +0800 |
commit | 5c6e465f69e6e04580af094fdb749b12af6a7324 (patch) | |
tree | f1269220812b0dce45c5455364541dd603ae6ca1 /PKGBUILD | |
download | aur-5c6e465f69e6e04580af094fdb749b12af6a7324.tar.gz |
add r-damirseq
Diffstat (limited to 'PKGBUILD')
-rw-r--r-- | PKGBUILD | 56 |
1 files changed, 56 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..38be4b621b80 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,56 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=DaMiRseq +_pkgver=2.8.0 +pkgname=r-${_pkgname,,} +pkgver=2.8.0 +pkgrel=1 +pkgdesc='Data Mining for RNA-seq data: normalization, feature selection and classification' +arch=('any') +url="https://bioconductor.org/packages/${_pkgname}" +license=('GPL') +depends=( + r + r-arm + r-caret + r-corrplot + r-deseq2 + r-e1071 + r-edaseq + r-edger + r-factominer + r-fselector + r-ggplot2 + r-hmisc + r-ineq + r-kknn + r-limma + r-lubridate + r-pheatmap + r-pls + r-plsvarsel + r-plyr + r-randomforest + r-rcolorbrewer + r-reshape2 + r-rsnns + r-summarizedexperiment + r-sva +) +optdepends=( + r-biocstyle + r-knitr + r-testthat +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('2fa0c4cbc03a3ee01c8d0b75d203722f2b6d242f2c1353395f08ae835844d2d3') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |