add r-deconvr

1 files changed, 58 insertions, 0 deletions

diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..68f314d37660
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,58 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=deconvR
+_pkgver=1.2.0
+pkgname=r-${_pkgname,,}
+pkgver=1.2.0
+pkgrel=1
+pkgdesc='Simulation and Deconvolution of Omic Profiles'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('Artistic2.0')
+depends=(
+  r
+  r-assertthat
+  r-biocgenerics
+  r-data.table
+  r-dplyr
+  r-e1071
+  r-foreach
+  r-genomicranges
+  r-iranges
+  r-magrittr
+  r-matrixstats
+  r-methylkit
+  r-nnls
+  r-quadprog
+  r-rsq
+  r-s4vectors
+  r-tidyr
+)
+optdepends=(
+  r-biocstyle
+  r-covr
+  r-devtools
+  r-doparallel
+  r-ggplot2
+  r-granulator
+  r-knitr
+  r-parallel
+  r-refmanager
+  r-reshape2
+  r-rmarkdown
+  r-roxygen2
+  r-sessioninfo
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('a3e6d733e1220482252d753a2e819d769fdc0e5fff0f23ffd64c57c52c1d3f24')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: