[lilac] updated to 3.28.1-1

1 files changed, 24 insertions, 14 deletions

diff --git a/PKGBUILD b/PKGBUILD
index 311a0f381296..95801381781b 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -1,45 +1,55 @@
-# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+# Contributor: Guoyi Zhang <guoyizhang at malacology dot net>
 
 _pkgname=DOSE
-_pkgver=3.28.0
+_pkgver=3.28.1
 pkgname=r-${_pkgname,,}
-pkgver=3.28.0
+pkgver=${_pkgver//-/.}
 pkgrel=1
-pkgdesc='Disease Ontology Semantic and Enrichment analysis'
-arch=('any')
+pkgdesc="Disease Ontology Semantic and Enrichment analysis"
+arch=(any)
 url="https://bioconductor.org/packages/${_pkgname}"
-license=('Artistic2.0')
+license=(Artistic2.0)
 depends=(
-  r
   r-annotationdbi
   r-biocparallel
   r-fgsea
   r-ggplot2
   r-gosemsim
   r-hdo.db
-  r-hpo.db
-  r-mpo.db
   r-qvalue
   r-reshape2
+  r-yulab.utils
+)
+checkdepends=(
+  r-testthat
 )
 optdepends=(
   r-clusterprofiler
   r-gson
+  r-hpo.db
   r-knitr
+  r-mpo.db
   r-org.hs.eg.db
   r-prettydoc
   r-rmarkdown
   r-testthat
 )
 source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
-sha256sums=('9e6b7edb00748f605aaa0175fb038dacaa64aadef208e72975a0093ef55739f6')
+md5sums=('11096edb2862c8a442f53435082e40b6')
+sha256sums=('77e86745c3ce54f36a79c35a3c5a6fa1f86090a10b66b0a5647f2d2c842db10a')
 
 build() {
-  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+  mkdir -p build
+  R CMD INSTALL "$_pkgname" -l build
+}
+
+check() {
+  cd "$_pkgname/tests"
+  R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
 }
 
 package() {
-  install -dm0755 "${pkgdir}/usr/lib/R/library"
-  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
 }
-# vim:set ts=2 sw=2 et: