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author | Sukanka | 2022-06-06 08:48:37 +0800 |
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committer | Sukanka | 2022-06-06 08:48:37 +0800 |
commit | bd9ff0847beb292df7ac33c4a19e9dba44313dde (patch) | |
tree | 2f68d224bed906932fa0a225f2b75ad8df8fe735 /PKGBUILD | |
download | aur-bd9ff0847beb292df7ac33c4a19e9dba44313dde.tar.gz |
add r-edaseq
Diffstat (limited to 'PKGBUILD')
-rw-r--r-- | PKGBUILD | 49 |
1 files changed, 49 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..27a4b2109dcd --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,49 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=EDASeq +_pkgver=2.30.0 +pkgname=r-${_pkgname,,} +pkgver=2.30.0 +pkgrel=1 +pkgdesc='Exploratory Data Analysis and Normalization for RNA-Seq' +arch=('any') +url="https://bioconductor.org/packages/${_pkgname}" +license=('Artistic2.0') +depends=( + r + r-annotationdbi + r-aroma.light + r-biobase + r-biocgenerics + r-biocmanager + r-biomart + r-biostrings + r-genomicfeatures + r-genomicranges + r-iranges + r-rsamtools + r-shortread +) +optdepends=( + r-biocstyle + r-deseq2 + r-edger + r-kernsmooth + r-knitr + r-leebamviews + r-rmarkdown + r-testthat + r-yeastrnaseq +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('9a1fd96f0c01c0afc524a851d5a955ac0b939a1ad79b08e35155e3dd615dd7e2') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |