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author | Sukanka | 2022-06-06 09:00:31 +0800 |
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committer | Sukanka | 2022-06-06 09:00:31 +0800 |
commit | 00577fc63b5ca44638ef33979273b1d89c3bc8b4 (patch) | |
tree | 197ca631f01fb4755a2e583fa5a6368858f63eb4 /PKGBUILD | |
download | aur-00577fc63b5ca44638ef33979273b1d89c3bc8b4.tar.gz |
add r-enmcb
Diffstat (limited to 'PKGBUILD')
-rw-r--r-- | PKGBUILD | 48 |
1 files changed, 48 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..75c77522d952 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,48 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=EnMCB +_pkgver=1.8.1 +pkgname=r-${_pkgname,,} +pkgver=1.8.1 +pkgrel=1 +pkgdesc='Predicting Disease Progression Based on Methylation Correlated Blocks using Ensemble Models' +arch=('any') +url="https://bioconductor.org/packages/${_pkgname}" +license=('GPL') +depends=( + r + r-doparallel + r-foreach + r-ggplot2 + r-glmnet + r-illuminahumanmethylation450kanno.ilmn12.hg19 + r-mboost + r-minfi + r-rms + r-survivalroc + r-survivalsvm + r-igraph +) +optdepends=( + r-affycoretools + r-biobase + r-knitr + r-plotroc + r-prognosticroc + r-rmarkdown + r-summarizedexperiment + r-survminer + r-testthat +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('129e5a18c4051e618778b15b32a6ebe8105896ad1eca45c23ed534e2de220543') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |