diff options
author | Pekka Ristola | 2023-11-23 21:20:53 +0200 |
---|---|---|
committer | Pekka Ristola | 2023-11-23 21:20:53 +0200 |
commit | 963a8ecb44de3657994c6d86924f1484e218de16 (patch) | |
tree | ba347ffad1ea8a2c9599e9b7009d552ddfaa9315 /PKGBUILD | |
download | aur-963a8ecb44de3657994c6d86924f1484e218de16.tar.gz |
Version 1.0.0
Diffstat (limited to 'PKGBUILD')
-rw-r--r-- | PKGBUILD | 46 |
1 files changed, 46 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..4c2485604e09 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,46 @@ +# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com> + +_pkgname=enrichViewNet +_pkgver=1.0.0 +pkgname=r-${_pkgname,,} +pkgver=${_pkgver//-/.} +pkgrel=1 +pkgdesc="From functional enrichment results to biological networks" +arch=(any) +url="https://bioconductor.org/packages/${_pkgname}" +license=(Artistic2.0) +depends=( + r-enrichplot + r-gprofiler2 + r-jsonlite + r-rcy3 + r-strex + r-stringr +) +checkdepends=( + r-testthat +) +optdepends=( + r-biocstyle + r-knitr + r-rmarkdown + r-testthat +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +md5sums=('5b2eb51ee4f57abd3b77da182e7e5d1a') +sha256sums=('9b7bdd6591da9e94251ed4599287814b53ccae5eeace8c5fd689e9818160e510') + +build() { + mkdir -p build + R CMD INSTALL "$_pkgname" -l build +} + +check() { + cd "$_pkgname/tests" + R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R +} + +package() { + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" +} |