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| author | Pekka Ristola | 2023-11-30 17:57:08 +0200 |
|---|---|---|
| committer | Pekka Ristola | 2023-11-30 17:57:08 +0200 |
| commit | d0e82a003098baaf65a4574659bcd5e46107f864 (patch) | |
| tree | 205101292156202e8bd18a5063664f9e6ebd7a61 /PKGBUILD | |
| download | aur-d0e82a003098baaf65a4574659bcd5e46107f864.tar.gz | |
Version 1.4.0
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 57 |
1 files changed, 57 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..fc629d1be2c8 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,57 @@ +# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com> + +_pkgname=epistasisGA +_pkgver=1.4.0 +pkgname=r-${_pkgname,,} +pkgver=${_pkgver//-/.} +pkgrel=1 +pkgdesc="An R package to identify multi-snp effects in nuclear family studies using the GADGETS method" +arch=(x86_64) +url="https://bioconductor.org/packages/${_pkgname}" +license=(GPL3) +depends=( + blas + lapack + r-batchtools + r-bigmemory + r-biocparallel + r-data.table + r-ggplot2 + r-igraph + r-matrixstats + r-qgraph +) +makedepends=( + r-bh + r-rcpp + r-rcpparmadillo +) +checkdepends=( + r-testthat +) +optdepends=( + r-biocstyle + r-kableextra + r-knitr + r-magrittr + r-rmarkdown + r-testthat +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +md5sums=('79635d9683f002813e51fa3c17e49b39') +sha256sums=('214867cd3357037f6c094be7ef2dda4c7fb5653a84fd86b2c8354b06882ad836') + +build() { + mkdir -p build + R CMD INSTALL "$_pkgname" -l build +} + +check() { + cd "$_pkgname/tests" + R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R +} + +package() { + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" +} |