WIP

1 files changed, 17 insertions, 7 deletions

diff --git a/PKGBUILD b/PKGBUILD
index b713c5e34e6b..b35fdccf24f0 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -6,7 +6,7 @@ _bcname=GenomeInfoDb
 _bcver=1.34.9
 pkgname="r-${_bcname,,}"
 pkgver="${_bcver//[:-]/.}"
-pkgrel=1
+pkgrel=2
 pkgdesc="Utilities for manipulating chromosome names, including modifying them to follow a particular naming style"
 arch=("any")
 url="https://bioconductor.org/packages/release/bioc/html/${_bcname}.html"
@@ -33,19 +33,29 @@ optdepends=(
     "r-biocstyle"
     "r-knitr"
 )
+checkdepends=(
+    "${optdepends[@]}"
+    "r-rcmdcheck"
+)
+
 source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_bcname}_${_bcver}.tar.gz")
 b2sums=('d6e3e86125cc3f5e1ac703a75cee215da5da74321729a4b0b9956883049ca61a5bd1f104809c895ebb13aae75618b2d644607a63a779388d54443a738c9a9afd')
 
 build() {
-  R CMD INSTALL ${_bcname}_${_bcver}.tar.gz -l "${srcdir}"
+    mkdir -p "${srcdir}/build/"
+    R CMD INSTALL ${_bcname}_${_bcver}.tar.gz -l "${srcdir}/build/"
+}
+
+check() {
+    cd "${srcdir}/${_bcname}/"
+    R_LIBS="${srcdir}/build/" R CMD check --no-manual --no-multiarch --no-vignettes .
 }
 
 package() {
-  install -dm0755 "${pkgdir}/usr/lib/R/library"
-  cp -a --no-preserve=ownership "${_bcname}" "${pkgdir}/usr/lib/R/library"
+    install -dm0755 "${pkgdir}/usr/lib/R/library"
+    cp -a --no-preserve=ownership "${srcdir}/build/${_bcname}" "${pkgdir}/usr/lib/R/library"
 
-  if [[ -f "${_cranname}/LICENSE" ]]; then
-    install -Dm0644 "${_cranname}/LICENSE" "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE"
+    if [[ -f "${_cranname}/LICENSE" ]]; then
+        install -Dm0644 "${_cranname}/LICENSE" "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE"
   fi
-
 }