diff options
| author | Christoph Fink | 2022-04-29 13:15:53 +0300 |
|---|---|---|
| committer | Christoph Fink | 2022-04-29 13:15:53 +0300 |
| commit | bb4ab7631f8ee5154efee62e2813d0d4e75efdcb (patch) | |
| tree | 1f6f961a999800dbeb2c58699a6998a50afa8720 /PKGBUILD | |
| parent | 3ee386d48ecc58c7683c77dc2a8f63edddf18b15 (diff) | |
| download | aur-bb4ab7631f8ee5154efee62e2813d0d4e75efdcb.tar.gz | |
upgpkg: r-genomeinfodb 1.32.0-1
upstream release
upstream release
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 35 |
1 files changed, 30 insertions, 5 deletions
@@ -1,8 +1,9 @@ +# Maintainer: peippo <christoph+aur@christophfink.com> # Contributor: Viktor Drobot (aka dviktor) linux776 [at] gmail [dot] com # Contributor: Grey Christoforo <first name at last name dot net> _bcname=GenomeInfoDb -_bcver=1.30.0 +_bcver=1.32.0 pkgname=r-${_bcname,,} pkgver=${_bcver//[:-]/.} pkgrel=1 @@ -10,10 +11,30 @@ pkgdesc="Utilities for manipulating chromosome names, including modifying them t arch=(any) url="https://bioconductor.org/packages/release/bioc/html/${_bcname}.html" license=(Artistic-2.0) -depends=('r>=4.0.0' 'r-biocgenerics>=0.37.0' 'r-s4vectors>=0.25.12' 'r-iranges>=2.13.12' r-rcurl r-genomeinfodbdata) -optdepends=(r-genomicranges r-rsamtools r-genomicalignments r-genomicfeatures r-txdb.dmelanogaster.ucsc.dm3.ensgene r-bsgenome r-bsgenome.scerevisiae.ucsc.saccer2 r-bsgenome.celegans.ucsc.ce2 r-bsgenome.hsapiens.ncbi.grch38 r-runit r-biocstyle r-knitr) +depends=( + "r>=4.0.0" + "r-biocgenerics>=0.37.0" + "r-s4vectors>=0.25.12" + "r-iranges>=2.13.12" + r-rcurl + r-genomeinfodbdata +) +optdepends=( + r-genomicranges + r-rsamtools + r-genomicalignments + r-genomicfeatures + r-txdb.dmelanogaster.ucsc.dm3.ensgene + r-bsgenome + r-bsgenome.scerevisiae.ucsc.saccer2 + r-bsgenome.celegans.ucsc.ce2 + r-bsgenome.hsapiens.ncbi.grch38 + r-runit + r-biocstyle + r-knitr +) source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_bcname}_${_bcver}.tar.gz") -sha256sums=('da1a0d06fc4a0d6e549c74d9351eecf0f46d23f85a375e42ed18129e3e5d1ce4') +sha256sums=('622756af303fab201a0a091b2c77856d58c5a7dd79deb7896c9471aa5ce45bdb') build() { R CMD INSTALL ${_bcname}_${_bcver}.tar.gz -l "${srcdir}" @@ -21,6 +42,10 @@ build() { package() { install -dm0755 "${pkgdir}/usr/lib/R/library" - cp -a --no-preserve=ownership "${_bcname}" "${pkgdir}/usr/lib/R/library" + + if [[ -f "${_cranname}/LICENSE" ]]; then + install -Dm0644 "${_cranname}/LICENSE" "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE" + fi + } |