add r-genphen

1 files changed, 44 insertions, 0 deletions

diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..d9513243863c
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,44 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=genphen
+_pkgver=1.24.0
+pkgname=r-${_pkgname,,}
+pkgver=1.24.0
+pkgrel=1
+pkgdesc='genphen: tool for quantification of genotype-phenotype associations in genome wide association studies (GWAS)'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-biostrings
+  r-doparallel
+  r-e1071
+  r-foreach
+  r-ranger
+  r-rcpp
+  r-rpref
+  r-rstan
+)
+optdepends=(
+  r-ape
+  r-ggplot2
+  r-ggrepel
+  r-gridextra
+  r-knitr
+  r-reshape
+  r-testthat
+  r-xtable
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('6805ee931998ad03305a3b56a3356502cb0519cf1bba2f3fe931eece9ec2c0d4')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: