Version 1.0.0

1 files changed, 60 insertions, 0 deletions

diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..0f39b09836fc
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,60 @@
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+
+_pkgname=gg4way
+_pkgver=1.0.0
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//-/.}
+pkgrel=1
+pkgdesc="4way Plots of Differential Expression"
+arch=(any)
+url="https://bioconductor.org/packages/${_pkgname}"
+license=(MIT)
+depends=(
+  r-deseq2
+  r-dplyr
+  r-edger
+  r-ggplot2
+  r-ggrepel
+  r-glue
+  r-janitor
+  r-limma
+  r-magrittr
+  r-purrr
+  r-rlang
+  r-scales
+  r-stringr
+  r-tibble
+  r-tidyr
+)
+checkdepends=(
+  r-testthat
+)
+optdepends=(
+  r-airway
+  r-biocstyle
+  r-knitr
+  r-org.hs.eg.db
+  r-rmarkdown
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('500552b8ab9c3fc5cc58fcf56378a928')
+sha256sums=('cf44e456e5a2be78941dc2cf8b1a918fe4da0246bd285e53d1dc2636bd442af7')
+
+build() {
+  mkdir -p build
+  R CMD INSTALL "$_pkgname" -l build
+}
+
+check() {
+  cd "$_pkgname/tests"
+  R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
+}
+
+package() {
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+
+  install -d "$pkgdir/usr/share/licenses/$pkgname"
+  ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
+}