add r-glmgampoi

1 files changed, 56 insertions, 0 deletions

diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..d163dbdc8d9d
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,56 @@
+# system requirements: C++11
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=glmGamPoi
+_pkgver=1.8.0
+pkgname=r-${_pkgname,,}
+pkgver=1.8.0
+pkgrel=1
+pkgdesc='Fit a Gamma-Poisson Generalized Linear Model'
+arch=('x86_64')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-beachmat
+  r-biocgenerics
+  r-delayedarray
+  r-delayedmatrixstats
+  r-hdf5array
+  r-matrixstats
+  r-rcpp
+  r-rcpparmadillo
+  r-summarizedexperiment
+  gcc
+)
+optdepends=(
+  r-beachmat
+  r-bench
+  r-biocparallel
+  r-biocstyle
+  r-deseq2
+  r-edger
+  r-ggplot2
+  r-knitr
+  r-limma
+  r-mass
+  r-muscdata
+  r-rmarkdown
+  r-scran
+  r-statmod
+  r-tenxpbmcdata
+  r-testthat
+  r-zoo
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('09d2604dd57dcc055dde4df6a39c1fbcbaa040b168f7381e615b26f424f5384c')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: