add r-greylistchip

1 files changed, 39 insertions, 0 deletions

diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..16ee595f6b37
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,39 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=GreyListChIP
+_pkgver=1.28.1
+pkgname=r-${_pkgname,,}
+pkgver=1.28.1
+pkgrel=3
+pkgdesc='Grey Lists -- Mask Artefact Regions Based on ChIP Inputs'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('Artistic2.0')
+depends=(
+  r
+  r-bsgenome
+  r-genomeinfodb
+  r-genomicalignments
+  r-genomicranges
+  r-rsamtools
+  r-rtracklayer
+  r-summarizedexperiment
+)
+optdepends=(
+  r-biocgenerics
+  r-biocstyle
+  r-bsgenome.hsapiens.ucsc.hg19
+  r-runit
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('0f367385fc951724a1d494819618ea3880633d400b90ad570a14672537dfa270')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: