add r-h5vc

1 files changed, 53 insertions, 0 deletions

diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..81bca5faf3fe
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,53 @@
+# system requirements: GNU make
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=h5vc
+_pkgver=2.30.0
+pkgname=r-${_pkgname,,}
+pkgver=2.30.0
+pkgrel=1
+pkgdesc='Managing alignment tallies using a hdf5 backend'
+arch=('x86_64')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-abind
+  r-batchjobs
+  r-biocparallel
+  r-biostrings
+  r-genomeinfodb
+  r-genomicranges
+  r-ggplot2
+  r-gridextra
+  r-h5vcdata
+  r-iranges
+  r-reshape
+  r-rhdf5
+  r-rhtslib
+  r-rsamtools
+  r-s4vectors
+  make
+)
+optdepends=(
+  r-biocgenerics
+  r-biomart
+  r-bsgenome.hsapiens.ncbi.grch38
+  r-bsgenome.hsapiens.ucsc.hg19
+  r-knitr
+  r-locfit
+  r-rmarkdown
+  r-runit
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('0713f368e1aa0bbcf00a01130c8c9083efaa115b63859f8b74ba28e216717b07')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: