diff options
| author | BioArchLinuxBot | 2023-10-10 18:08:30 +0000 |
|---|---|---|
| committer | BioArchLinuxBot | 2023-10-10 18:08:30 +0000 |
| commit | 78e425c2daa8345f7a3b3001c3080cdf3adb7c89 (patch) | |
| tree | e56eaa2f8e6edb50e6b0456084b9d338eacb2702 /PKGBUILD | |
| parent | 0abe3ba545da71f6f7d8fe6f80742fd61bb4f072 (diff) | |
| download | aur-78e425c2daa8345f7a3b3001c3080cdf3adb7c89.tar.gz | |
[lilac] updated to 1.36.4-2
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 39 |
1 files changed, 24 insertions, 15 deletions
@@ -1,41 +1,50 @@ -# system requirements: C++11, GNU make -# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> +# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com> +# Contributor: Guoyi Zhang <guoyizhang at malacology dot net> _pkgname=HIBAG _pkgver=1.36.4 pkgname=r-${_pkgname,,} -pkgver=1.36.4 -pkgrel=1 -pkgdesc='HLA Genotype Imputation with Attribute Bagging' -arch=('x86_64') +pkgver=${_pkgver//-/.} +pkgrel=2 +pkgdesc="HLA Genotype Imputation with Attribute Bagging" +arch=(x86_64) url="https://bioconductor.org/packages/${_pkgname}" -license=('GPL') +license=(GPL3) depends=( - r r-rcppparallel - gcc - make +) +checkdepends=( + r-gdsfmt + r-ggplot2 + r-reshape2 + r-snprelate ) optdepends=( r-gdsfmt r-ggplot2 r-knitr r-markdown - r-parallel r-reshape2 r-rmarkdown + r-rsamtools r-seqarray r-snprelate ) source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +md5sums=('db885989e0e66d6ddad9fa71425a34d2') sha256sums=('8a5c38950418db1cd6ab9c017d4c7c715b31b4b94d878d17bd6219934e3b93b1') build() { - R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" + mkdir -p build + R CMD INSTALL "$_pkgname" -l build +} + +check() { + cd "$_pkgname/tests" + R_LIBS="$srcdir/build" Rscript --vanilla runTests.R } package() { - install -dm0755 "${pkgdir}/usr/lib/R/library" - cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" } -# vim:set ts=2 sw=2 et: |