add r-ipath

1 files changed, 41 insertions, 0 deletions

diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..5a1bf84ed12d
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,41 @@
+# system requirements: C++11
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=iPath
+_pkgver=1.2.0
+pkgname=r-${_pkgname,,}
+pkgver=1.2.0
+pkgrel=1
+pkgdesc='iPath pipeline for detecting perturbed pathways at individual level'
+arch=('x86_64')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-biocparallel
+  r-ggplot2
+  r-ggpubr
+  r-matrixstats
+  r-mclust
+  r-rcpp
+  r-rcpparmadillo
+  r-survminer
+  gcc
+)
+optdepends=(
+  r-biocstyle
+  r-knitr
+  r-rmarkdown
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('1c4ef038ce63d99aa32028b008d1720fdacd39081bb6517f6f3e17e6861c7cbe')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: