add r-isee

1 files changed, 60 insertions, 0 deletions

diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..d369c79ddf84
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,60 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=iSEE
+_pkgver=2.8.0
+pkgname=r-${_pkgname,,}
+pkgver=2.8.0
+pkgrel=1
+pkgdesc='Interactive SummarizedExperiment Explorer'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('MIT')
+depends=(
+  r
+  r-biocgenerics
+  r-circlize
+  r-colourpicker
+  r-complexheatmap
+  r-dt
+  r-ggplot2
+  r-ggrepel
+  r-igraph
+  r-rintrojs
+  r-s4vectors
+  r-shiny
+  r-shinyace
+  r-shinydashboard
+  r-shinyjs
+  r-shinywidgets
+  r-singlecellexperiment
+  r-summarizedexperiment
+  r-vipor
+  r-viridislite
+)
+optdepends=(
+  r-biocstyle
+  r-delayedarray
+  r-hdf5array
+  r-htmltools
+  r-knitr
+  r-rcolorbrewer
+  r-rmarkdown
+  r-scater
+  r-scrnaseq
+  r-tenxpbmcdata
+  r-testthat
+  r-viridis
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('f0cf783d15f0a1e720df000fe1ef25c816af316a498f1f31792510ede068b7ea')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
+}
+# vim:set ts=2 sw=2 et: