add r-knowseq

1 files changed, 49 insertions, 0 deletions

diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..6bbf0a60e725
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,49 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=KnowSeq
+_pkgver=1.10.0
+pkgname=r-${_pkgname,,}
+pkgver=1.10.0
+pkgrel=1
+pkgdesc='KnowSeq R/Bioc package: The Smart Transcriptomic Pipeline'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-caret
+  r-cqn
+  r-e1071
+  r-edger
+  r-ggplot2
+  r-gridextra
+  r-hmisc
+  r-httr
+  r-jsonlite
+  r-kernlab
+  r-limma
+  r-praznik
+  r-r.utils
+  r-randomforest
+  r-reshape2
+  r-rlist
+  r-rmarkdown
+  r-stringr
+  r-sva
+  r-xml
+)
+optdepends=(
+  r-knitr
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('237e5551712291e0c896649dd604653d2f2e7353c3fac6886eb25d771e076572')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: