add r-lumi

1 files changed, 47 insertions, 0 deletions

diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..dbc5f7f1a29f
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,47 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=lumi
+_pkgver=2.48.0
+pkgname=r-${_pkgname,,}
+pkgver=2.48.0
+pkgrel=1
+pkgdesc='BeadArray Specific Methods for Illumina Methylation and Expression Microarrays'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('LGPL')
+depends=(
+  r
+  r-affy
+  r-annotate
+  r-annotationdbi
+  r-biobase
+  r-dbi
+  r-genomicfeatures
+  r-genomicranges
+  r-methylumi
+  r-nleqslv
+  r-preprocesscore
+  r-rsqlite
+)
+optdepends=(
+  r-beadarray
+  r-genefilter
+  r-limma
+  r-lumibarnes
+  r-lumihumanall.db
+  r-lumihumanidmapping
+  r-rcolorbrewer
+  r-vsn
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('2d7964151fc7eab8cd4bea18b17f2d3c60f233a5302bbf46d5d5fb200ba5f51b')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: