add r-lymphoseq

1 files changed, 48 insertions, 0 deletions

diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..b793da2d6adb
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,48 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=LymphoSeq
+_pkgver=1.24.0
+pkgname=r-${_pkgname,,}
+pkgver=1.24.0
+pkgrel=1
+pkgdesc='Analyze high-throughput sequencing of T and B cell receptors'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('Artistic2.0')
+depends=(
+  r
+  r-biostrings
+  r-circlize
+  r-data.table
+  r-dplyr
+  r-ggplot2
+  r-ggtree
+  r-ineq
+  r-lymphoseqdb
+  r-msa
+  r-phangorn
+  r-plyr
+  r-rcolorbrewer
+  r-reshape
+  r-stringdist
+  r-upsetr
+  r-venndiagram
+)
+optdepends=(
+  r-knitr
+  r-pheatmap
+  r-rmarkdown
+  r-wordcloud
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('81412096ed8f2bc4c604923d3286e83d57e8ba575865eea837f1168ed35d0a8a')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: