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author | Sukanka | 2022-06-06 14:32:04 +0800 |
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committer | Sukanka | 2022-06-06 14:32:04 +0800 |
commit | b3389c60913486cde22533c7778b53e35137431b (patch) | |
tree | 0670cb4d9d4b723c4313d35070faa4c2b7098514 /PKGBUILD | |
download | aur-b3389c60913486cde22533c7778b53e35137431b.tar.gz |
add r-maftools
Diffstat (limited to 'PKGBUILD')
-rw-r--r-- | PKGBUILD | 52 |
1 files changed, 52 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..9e133c3c6eaa --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,52 @@ +# system requirements: GNU make +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=maftools +_pkgver=2.12.0 +pkgname=r-${_pkgname,,} +pkgver=2.12.0 +pkgrel=1 +pkgdesc='Summarize, Analyze and Visualize MAF Files' +arch=('x86_64') +url="https://bioconductor.org/packages/${_pkgname}" +license=('MIT') +depends=( + r + r-data.table + r-rcolorbrewer + r-rhtslib + r-zlibbioc + make + r-dnacopy +) +optdepends=( + r-berryfunctions + r-biostrings + r-bsgenome + r-bsgenome.hsapiens.ucsc.hg19 + r-curl + r-genomicranges + r-iranges + r-knitr + r-mclust + r-multiassayexperiment + r-nmf + r-pheatmap + r-r.utils + r-raggedexperiment + r-rmarkdown + r-s4vectors +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('66ceeb909cc6bd3a952f305273f95a6ee836c5033252c58925463bb24b8a0ebf') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" + install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}" +} +# vim:set ts=2 sw=2 et: |