add r-mcsea

1 files changed, 50 insertions, 0 deletions

diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..39cbd2710170
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,50 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=mCSEA
+_pkgver=1.16.0
+pkgname=r-${_pkgname,,}
+pkgver=1.16.0
+pkgrel=1
+pkgdesc='Methylated CpGs Set Enrichment Analysis'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-biomart
+  r-fgsea
+  r-genomicfeatures
+  r-genomicranges
+  r-ggplot2
+  r-gviz
+  r-homo.sapiens
+  r-iranges
+  r-limma
+  r-mcseadata
+  r-s4vectors
+  r-summarizedexperiment
+)
+optdepends=(
+  r-biobase
+  r-biocgenerics
+  r-biocstyle
+  r-flowsorted.blood.450k
+  r-knitr
+  r-leukemiaseset
+  r-minfi
+  r-minfidata
+  r-rmarkdown
+  r-runit
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('a8c303ebd5ccab6bdd4b4eba9013268a7488af95ab4ea5601b283c9fd334e481')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: