add r-metavizr

1 files changed, 51 insertions, 0 deletions

diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..9121ad4beeab
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,51 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=metavizr
+_pkgver=1.20.0
+pkgname=r-${_pkgname,,}
+pkgver=1.20.0
+pkgrel=1
+pkgdesc='R Interface to the metaviz web app for interactive metagenomics data analysis and visualization'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('MIT')
+depends=(
+  r
+  r-biobase
+  r-data.table
+  r-digest
+  r-epivizr
+  r-epivizrdata
+  r-epivizrserver
+  r-epivizrstandalone
+  r-genomeinfodb
+  r-httr
+  r-metagenomeseq
+  r-phyloseq
+  r-vegan
+)
+optdepends=(
+  r-biocstyle
+  r-etec16s
+  r-experimenthub
+  r-gss
+  r-knitr
+  r-matrixstats
+  r-msd16s
+  r-rmarkdown
+  r-testthat
+  r-tidyr
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('3676eff172f6fab2477930059133b41ad80e3bb9edf43d64cc6e284314495f6a')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
+}
+# vim:set ts=2 sw=2 et: