add r-methcp

1 files changed, 40 insertions, 0 deletions

diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..208baa2af2ca
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,40 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=MethCP
+_pkgver=1.7.0
+pkgname=r-${_pkgname,,}
+pkgver=1.7.0
+pkgrel=2
+pkgdesc='Differential methylation anlsysis for bisulfite sequencing data'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('Artistic2.0')
+depends=(
+  r
+  r-biocparallel
+  r-bsseq
+  r-dnacopy
+  r-dss
+  r-genomeinfodb
+  r-genomicranges
+  r-iranges
+  r-methylkit
+  r-s4vectors
+)
+optdepends=(
+  r-knitr
+  r-rmarkdown
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('76aef5e5e09d13775d9e1fb292b2aa81b393c2d7a44cd78ddbf14df672e5b0ea')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: