add r-mia

1 files changed, 63 insertions, 0 deletions

diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..d5566d66ac7c
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,63 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=mia
+_pkgver=1.4.0
+pkgname=r-${_pkgname,,}
+pkgver=1.4.0
+pkgrel=1
+pkgdesc='Microbiome analysis'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('Artistic2.0')
+depends=(
+  r
+  r-ape
+  r-biocgenerics
+  r-biocparallel
+  r-biostrings
+  r-decipher
+  r-decontam
+  r-delayedarray
+  r-delayedmatrixstats
+  r-dirichletmultinomial
+  r-dplyr
+  r-iranges
+  r-multiassayexperiment
+  r-rlang
+  r-s4vectors
+  r-scater
+  r-scuttle
+  r-singlecellexperiment
+  r-summarizedexperiment
+  r-tibble
+  r-tidyr
+  r-treesummarizedexperiment
+  r-vegan
+)
+optdepends=(
+  r-ade4
+  r-biocstyle
+  r-biomformat
+  r-dada2
+  r-knitr
+  r-microbiomedatasets
+  r-patchwork
+  r-phyloseq
+  r-reldist
+  r-rmarkdown
+  r-stringr
+  r-testthat
+  r-yaml
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('b332f5bc9a2955fd4fff40b98c06696a816fcf15224c0799ea00afa40d4eea96')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: