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author | Pekka Ristola | 2023-11-26 18:12:02 +0200 |
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committer | Pekka Ristola | 2023-11-26 18:12:02 +0200 |
commit | 74bf98d62c8dc6b5143bb7806d159f891d21627b (patch) | |
tree | cbf484ed9a9e10df79888f263ad1d75ea7de65b5 /PKGBUILD | |
download | aur-74bf98d62c8dc6b5143bb7806d159f891d21627b.tar.gz |
Version 1.0.0
Diffstat (limited to 'PKGBUILD')
-rw-r--r-- | PKGBUILD | 73 |
1 files changed, 73 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..56e900e56a46 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,73 @@ +# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com> + +_pkgname=Moonlight2R +_pkgver=1.0.0 +pkgname=r-${_pkgname,,} +pkgver=${_pkgver//-/.} +pkgrel=1 +pkgdesc="Identify oncogenes and tumor suppressor genes from omics data" +arch=(any) +url="https://bioconductor.org/packages/${_pkgname}" +license=(GPL3) +depends=( + r-annotationhub + r-biobase + r-circlize + r-clusterprofiler + r-complexheatmap + r-doparallel + r-dose + r-dplyr + r-easypubmed + r-foreach + r-fuzzyjoin + r-genomicranges + r-geoquery + r-gplots + r-hiver + r-magrittr + r-org.hs.eg.db + r-parmigene + r-purrr + r-qpdf + r-randomforest + r-rcolorbrewer + r-readr + r-rismed + r-rtracklayer + r-seqminer + r-stringr + r-tibble + r-tidyheatmap + r-tidyr +) +checkdepends=( + r-testthat +) +optdepends=( + r-biocstyle + r-devtools + r-knitr + r-png + r-rmarkdown + r-roxygen2 + r-testthat +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +md5sums=('45af1bc580f9231cb2a83eae7517d3b8') +sha256sums=('e306a3aa11700652a2f1ada4cec3eed4112ec43d3392da550538b8c4bf6ee909') + +build() { + mkdir -p build + R CMD INSTALL "$_pkgname" -l build +} + +check() { + cd "$_pkgname/tests" + R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R +} + +package() { + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" +} |