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author | Sukanka | 2022-06-06 16:39:23 +0800 |
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committer | Sukanka | 2022-06-06 16:39:23 +0800 |
commit | 4a6a7127f3272f72153e4ac16660f10c362ebe8f (patch) | |
tree | 793dda932e045922ce431a6b9c07c42a4b9564e2 /PKGBUILD | |
download | aur-4a6a7127f3272f72153e4ac16660f10c362ebe8f.tar.gz |
add r-musicatk
Diffstat (limited to 'PKGBUILD')
-rw-r--r-- | PKGBUILD | 86 |
1 files changed, 86 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..39b6150b39f5 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,86 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=musicatk +_pkgver=1.6.0 +pkgname=r-${_pkgname,,} +pkgver=1.6.0 +pkgrel=1 +pkgdesc='Mutational Signature Comprehensive Analysis Toolkit' +arch=('any') +url="https://bioconductor.org/packages/${_pkgname}" +license=('LGPL') +depends=( + r + r-biostrings + r-bsgenome + r-bsgenome.hsapiens.ucsc.hg19 + r-bsgenome.hsapiens.ucsc.hg38 + r-bsgenome.mmusculus.ucsc.mm10 + r-bsgenome.mmusculus.ucsc.mm9 + r-complexheatmap + r-cowplot + r-data.table + r-decomptumor2sig + r-deconstructsigs + r-dplyr + r-factoextra + r-genomeinfodb + r-genomicfeatures + r-genomicranges + r-ggplot2 + r-ggrepel + r-gridextra + r-gtools + r-iranges + r-maftools + r-magrittr + r-matrixtests + r-mcmcprecision + r-nmf + r-philentropy + r-plotly + r-rlang + r-s4vectors + r-shiny + r-shinyalert + r-shinybs + r-shinybusy + r-shinydashboard + r-shinyjqui + r-shinyjs + r-sortable + r-stringi + r-stringr + r-summarizedexperiment + r-tcgabiolinks + r-tibble + r-tidyr + r-topicmodels + r-txdb.hsapiens.ucsc.hg19.knowngene + r-txdb.hsapiens.ucsc.hg38.knowngene + r-uwot + r-variantannotation + r-withr +) +optdepends=( + r-biocstyle + r-covr + r-knitr + r-qpdf + r-rmarkdown + r-survival + r-testthat + r-xvector +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('df0038f6b34d4cc3bac381bcdf4358889da241fe8a72b8fa1f4855c6bd0064c8') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |