diff options
| author | Sukanka | 2022-06-06 16:45:01 +0800 |
|---|---|---|
| committer | Sukanka | 2022-06-06 16:45:01 +0800 |
| commit | 3f801d9fd92322086dc2091ebd2fcec6471ece34 (patch) | |
| tree | 8f19c0afed9e673c0d265a9569db3cd900d0aaa5 /PKGBUILD | |
| download | aur-3f801d9fd92322086dc2091ebd2fcec6471ece34.tar.gz | |
add r-nadfinder
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 53 |
1 files changed, 53 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..df5f651aca93 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,53 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=NADfinder +_pkgver=1.20.0 +pkgname=r-${_pkgname,,} +pkgver=1.20.0 +pkgrel=1 +pkgdesc='Call wide peaks for sequencing data' +arch=('any') +url="https://bioconductor.org/packages/${_pkgname}" +license=('GPL') +depends=( + r + r-atacseqqc + r-baseline + r-biocgenerics + r-corrplot + r-csaw + r-empiricalbrownsmethod + r-genomeinfodb + r-genomicalignments + r-genomicranges + r-iranges + r-limma + r-metap + r-rsamtools + r-rtracklayer + r-s4vectors + r-signal + r-summarizedexperiment + r-trackviewer +) +optdepends=( + r-biocmanager + r-biocstyle + r-bsgenome.mmusculus.ucsc.mm10 + r-knitr + r-rmarkdown + r-runit + r-testthat +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('1b4653a948262ed746eb0f4c036b520852d5f7ee843aa1b0218a24236371dc7a') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |