add r-nanomethviz

1 files changed, 68 insertions, 0 deletions

diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..8b1dd0e79813
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,68 @@
+# system requirements: C++11
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=NanoMethViz
+_pkgver=2.2.0
+pkgname=r-${_pkgname,,}
+pkgver=2.2.0
+pkgrel=1
+pkgdesc='Visualise methlation data from Oxford Nanopore sequencing'
+arch=('x86_64')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('Apache')
+depends=(
+  r
+  r-annotationdbi
+  r-assertthat
+  r-biocsingular
+  r-bsseq
+  r-cpp11
+  r-data.table
+  r-dplyr
+  r-e1071
+  r-forcats
+  r-fs
+  r-genomicranges
+  r-ggplot2
+  r-ggthemes
+  r-glue
+  r-limma
+  r-patchwork
+  r-purrr
+  r-rcpp
+  r-readr
+  r-rlang
+  r-rsamtools
+  r-rsqlite
+  r-s4vectors
+  r-scales
+  r-scico
+  r-stringr
+  r-summarizedexperiment
+  r-tibble
+  r-tidyr
+  r-withr
+  r-zlibbioc
+  gcc
+)
+optdepends=(
+  r-covr
+  r-dss
+  r-homo.sapiens
+  r-knitr
+  r-mus.musculus
+  r-rmarkdown
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('818a7b18c15ebe791f70b30badaafccda0a1e9de2d285de0f75d9576e11fb363')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: