add r-nanotator

1 files changed, 48 insertions, 0 deletions

diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..d70b9d2e67b5
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,48 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=nanotatoR
+_pkgver=1.12.0
+pkgname=r-${_pkgname,,}
+pkgver=1.12.0
+pkgrel=1
+pkgdesc='Next generation structural variant annotation and classification'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('custom')
+depends=(
+  r
+  r-annotationdbi
+  r-curl
+  r-dplyr
+  r-genomicranges
+  r-hash
+  r-httr
+  r-knitr
+  r-openxlsx
+  r-org.hs.eg.db
+  r-rentrez
+  r-rlang
+  r-stringr
+  r-testthat
+  r-tidyverse
+  r-varfrompdb
+  r-xml
+  r-xml2r
+)
+optdepends=(
+  r-rmarkdown
+  r-yaml
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('604ec95858a4abc81dffb055fbb9e0dfb0d8528d7ab91fb79dd855639d30248f')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
+}
+# vim:set ts=2 sw=2 et: