add r-nanotube

1 files changed, 46 insertions, 0 deletions

diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..021125d265ba
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,46 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=NanoTube
+_pkgver=1.2.0
+pkgname=r-${_pkgname,,}
+pkgver=1.2.0
+pkgrel=1
+pkgdesc='An Easy Pipeline for NanoString nCounter Data Analysis'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-biobase
+  r-fgsea
+  r-ggplot2
+  r-limma
+  r-reshape
+)
+optdepends=(
+  r-grid
+  r-kableextra
+  r-knitr
+  r-nanostringdiff
+  r-pheatmap
+  r-plotly
+  r-qusage
+  r-rlang
+  r-rmarkdown
+  r-ruv
+  r-shiny
+  r-testthat
+  r-xlsx
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('c7ac63d2865e04cea984914e73b1a9482f1c090d1fe21cf79f9db752c2eaa038')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: