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| author | Sukanka | 2022-06-06 16:56:37 +0800 |
|---|---|---|
| committer | Sukanka | 2022-06-06 16:56:37 +0800 |
| commit | 2c4e62d09400fbd28453f08ac84f0b1cfa43a6d5 (patch) | |
| tree | a73eed05d39657c618e8bb0b441cc7f13299b143 /PKGBUILD | |
| download | aur-2c4e62d09400fbd28453f08ac84f0b1cfa43a6d5.tar.gz | |
add r-netdx
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 59 |
1 files changed, 59 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..c4a4659686a7 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,59 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=netDx +_pkgver=1.8.0 +pkgname=r-${_pkgname,,} +pkgver=1.8.0 +pkgrel=1 +pkgdesc='Network-based patient classifier' +arch=('any') +url="https://bioconductor.org/packages/${_pkgname}" +license=('MIT') +depends=( + r + r-bigmemory + r-biocfilecache + r-combinat + r-doparallel + r-foreach + r-genomeinfodb + r-genomicranges + r-ggplot2 + r-glmnet + r-httr + r-igraph + r-iranges + r-multiassayexperiment + r-plotrix + r-pracma + r-rappdirs + r-rcolorbrewer + r-reshape2 + r-rocr + r-rtsne + r-s4vectors +) +optdepends=( + r-biocstyle + r-clusterexperiment + r-curatedtcgadata + r-knitr + r-netsmooth + r-rcy3 + r-rmarkdown + r-scater + r-testthat +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('9491fc38c3424165ae359dc64ef13b94b083057b2650ea7eb5de60f82a30c76c') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" + install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}" +} +# vim:set ts=2 sw=2 et: |