add r-organismdbi

1 files changed, 49 insertions, 0 deletions

diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..2083efaf3719
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,49 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=OrganismDbi
+_pkgver=1.38.0
+pkgname=r-${_pkgname,,}
+pkgver=1.38.0
+pkgrel=1
+pkgdesc='Software to enable the smooth interfacing of different database packages'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('Artistic2.0')
+depends=(
+  r
+  r-annotationdbi
+  r-biobase
+  r-biocgenerics
+  r-biocmanager
+  r-dbi
+  r-genomicfeatures
+  r-genomicranges
+  r-graph
+  r-iranges
+  r-rbgl
+  r-s4vectors
+)
+optdepends=(
+  r-annotationhub
+  r-biomart
+  r-bsgenome.hsapiens.ucsc.hg19
+  r-fdb.ucsc.trnas
+  r-homo.sapiens
+  r-mirbase.db
+  r-rattus.norvegicus
+  r-rmariadb
+  r-rtracklayer
+  r-runit
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('d9b3e40d252a8d15c50c9444e147b10d3a6474c0d4852092d36957d27c5474f6')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: