add r-packfinder

1 files changed, 42 insertions, 0 deletions

diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..6551e0dd32f3
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,42 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=packFinder
+_pkgver=1.8.0
+pkgname=r-${_pkgname,,}
+pkgver=1.8.0
+pkgrel=1
+pkgdesc='de novo Annotation of Pack-TYPE Transposable Elements'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-ape
+  r-biostrings
+  r-genomicranges
+  r-iranges
+  r-kmer
+  r-s4vectors
+)
+optdepends=(
+  r-bioccheck
+  r-biocstyle
+  r-biocviews
+  r-biomartr
+  r-dendextend
+  r-knitr
+  r-rmarkdown
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('f8e994f58d306a3132b7d81316bddb0cd50c098daa96f8eff5e1a0ce11e49b6b')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: