Version 1.6.0

1 files changed, 56 insertions, 0 deletions

diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..cc36cb9e8ca5
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,56 @@
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+
+_pkgname=PanomiR
+_pkgver=1.6.0
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//-/.}
+pkgrel=1
+pkgdesc="Detection of miRNAs that regulate interacting groups of pathways"
+arch=(any)
+url="https://bioconductor.org/packages/${_pkgname}"
+license=(MIT)
+depends=(
+  r-clusterprofiler
+  r-dplyr
+  r-forcats
+  r-gseabase
+  r-igraph
+  r-limma
+  r-metap
+  r-org.hs.eg.db
+  r-preprocesscore
+  r-rcolorbrewer
+  r-rlang
+  r-tibble
+  r-withr
+)
+checkdepends=(
+  r-testthat
+)
+optdepends=(
+  r-biocstyle
+  r-knitr
+  r-rmarkdown
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('a8f96cdc267551107e69e8cb260a05c0')
+sha256sums=('683caee92d63498c49b5edcc84ec95490cd5f42a6b9d846b1113bb174cc57575')
+
+build() {
+  mkdir -p build
+  R CMD INSTALL "$_pkgname" -l build
+}
+
+check() {
+  cd "$_pkgname/tests"
+  R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
+}
+
+package() {
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+
+  install -d "$pkgdir/usr/share/licenses/$pkgname"
+  ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
+}