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| author | Pekka Ristola | 2023-11-27 13:50:00 +0200 |
|---|---|---|
| committer | Pekka Ristola | 2023-11-27 13:50:00 +0200 |
| commit | 8961fb332b3a612ac1a274b24a4cdc0317aaa595 (patch) | |
| tree | 001b5750a8c8ee4b7700e48f137bf443fdaa64d6 /PKGBUILD | |
| download | aur-8961fb332b3a612ac1a274b24a4cdc0317aaa595.tar.gz | |
Version 1.0.0
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 48 |
1 files changed, 48 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..b4b157e16210 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,48 @@ +# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com> + +_pkgname=partCNV +_pkgver=1.0.0 +pkgname=r-${_pkgname,,} +pkgver=${_pkgver//-/.} +pkgrel=1 +pkgdesc="Infer locally aneuploid cells using single cell RNA-seq data" +arch=(any) +url="https://bioconductor.org/packages/${_pkgname}" +license=(GPL2) +depends=( + r-annotationhub + r-data.table + r-depmixs4 + r-genomicranges + r-magrittr + r-seurat + r-singlecellexperiment +) +checkdepends=( + r-testthat +) +optdepends=( + r-biocstyle + r-iranges + r-knitr + r-rmarkdown + r-testthat +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +md5sums=('e004f2129cbb1fe1e84e33cf223c06f6') +sha256sums=('4a948e65fe1f20118f9f5642e23fa35b92bfae680b5da1762084e88e187d8a95') + +build() { + mkdir -p build + R CMD INSTALL "$_pkgname" -l build +} + +check() { + cd "$_pkgname/tests" + R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R +} + +package() { + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" +} |