add r-pathifier

1 files changed, 28 insertions, 0 deletions

diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..a6aa8d2ab17f
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,28 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=pathifier
+_pkgver=1.34.0
+pkgname=r-${_pkgname,,}
+pkgver=1.34.0
+pkgrel=1
+pkgdesc='Quantify deregulation of pathways in cancer'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('Artistic2.0')
+depends=(
+  r
+  r-princurve
+  r-r.oo
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('987fc7e75ff892f14a0b3d7406ed345e2e039b3ed9717e105d96c5a753db5629')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: