add r-probatch

1 files changed, 60 insertions, 0 deletions

diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..2d04f15a75c7
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,60 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=proBatch
+_pkgver=1.11.0
+pkgname=r-${_pkgname,,}
+pkgver=1.11.0
+pkgrel=1
+pkgdesc='Tools for Diagnostics and Corrections of Batch Effects in Proteomics'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-biobase
+  r-corrplot
+  r-data.table
+  r-dplyr
+  r-ggfortify
+  r-ggplot2
+  r-lazyeval
+  r-lubridate
+  r-magrittr
+  r-pheatmap
+  r-preprocesscore
+  r-purrr
+  r-pvca
+  r-rcolorbrewer
+  r-reshape2
+  r-rlang
+  r-scales
+  r-sva
+  r-tibble
+  r-tidyr
+  r-viridis
+  r-wesanderson
+  r-wgcna
+)
+optdepends=(
+  r-devtools
+  r-ggpubr
+  r-gridextra
+  r-gtable
+  r-knitr
+  r-rmarkdown
+  r-roxygen2
+  r-spelling
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('a6a93ce35b0e25bce3e0d1c493ba3bb47a94355a4e0b627b63d7b87931fd2689')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: