Version 1.6.0

1 files changed, 58 insertions, 0 deletions

diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..36a903b0f1b1
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,58 @@
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+
+_pkgname=PSMatch
+_pkgver=1.6.0
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//-/.}
+pkgrel=1
+pkgdesc="Handling and Managing Peptide Spectrum Matches"
+arch=(any)
+url="https://bioconductor.org/packages/${_pkgname}"
+license=(Artistic2.0)
+depends=(
+  r-biocgenerics
+  r-biocparallel
+  r-igraph
+  r-mscoreutils
+  r-protgenerics
+  r-qfeatures
+  r-s4vectors
+)
+checkdepends=(
+  r-msdata
+  r-mzid
+  r-mzr
+  r-spectra
+  r-testthat
+)
+optdepends=(
+  r-biocstyle
+  r-factoextra
+  r-knitr
+  r-msdata
+  r-mzid
+  r-mzr
+  r-rmarkdown
+  r-rpx
+  r-spectra
+  r-summarizedexperiment
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('4c63ca3d541af4e5925bcc2bde7d67ea')
+sha256sums=('d2776c4c3fa21073b8f444d8f581fcfadc1ef3832ea74bf948478500e2fa2350')
+
+build() {
+  mkdir -p build
+  R CMD INSTALL "$_pkgname" -l build
+}
+
+check() {
+  cd "$_pkgname/tests"
+  R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
+}
+
+package() {
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+}