add r-rcgh

1 files changed, 49 insertions, 0 deletions

diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..18423562eea7
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,49 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=rCGH
+_pkgver=1.26.0
+pkgname=r-${_pkgname,,}
+pkgver=1.26.0
+pkgrel=1
+pkgdesc='Comprehensive Pipeline for Analyzing and Visualizing Array-Based CGH Data'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('Artistic2.0')
+depends=(
+  r
+  r-acgh
+  r-affy
+  r-annotationdbi
+  r-dnacopy
+  r-genomeinfodb
+  r-genomicfeatures
+  r-genomicranges
+  r-ggplot2
+  r-iranges
+  r-limma
+  r-mclust
+  r-org.hs.eg.db
+  r-plyr
+  r-shiny
+  r-txdb.hsapiens.ucsc.hg18.knowngene
+  r-txdb.hsapiens.ucsc.hg19.knowngene
+  r-txdb.hsapiens.ucsc.hg38.knowngene
+)
+optdepends=(
+  r-biocgenerics
+  r-biocstyle
+  r-knitr
+  r-runit
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('2f4dddbfb09749a0e994a7b998503290e3b52bbcfb00de31c6fc56a219e60da8')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: