add r-recount

1 files changed, 59 insertions, 0 deletions

diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..a7d7e6621639
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,59 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=recount
+_pkgver=1.22.0
+pkgname=r-${_pkgname,,}
+pkgver=1.22.0
+pkgrel=1
+pkgdesc='Explore and download data from the recount project'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('Artistic2.0')
+depends=(
+  r
+  r-biocparallel
+  r-derfinder
+  r-downloader
+  r-genomeinfodb
+  r-genomicranges
+  r-geoquery
+  r-iranges
+  r-rcurl
+  r-rentrez
+  r-rtracklayer
+  r-s4vectors
+  r-summarizedexperiment
+)
+optdepends=(
+  r-annotationdbi
+  r-biocmanager
+  r-biocstyle
+  r-covr
+  r-deseq2
+  r-dt
+  r-edger
+  r-ensdb.hsapiens.v79
+  r-genomicfeatures
+  r-ggplot2
+  r-knitr
+  r-org.hs.eg.db
+  r-pheatmap
+  r-rcolorbrewer
+  r-refmanager
+  r-regionreport
+  r-rmarkdown
+  r-sessioninfo
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('9e668e7034e5ed1affca6e0f7d3cfd29af0c765f8906647b7dc7c2982d9237d6')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: