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| author | Sukanka | 2022-06-06 20:36:31 +0800 |
|---|---|---|
| committer | Sukanka | 2022-06-06 20:36:31 +0800 |
| commit | 8d6063d3c6d0227299b385da3448227ac2bf5d98 (patch) | |
| tree | 5fc23e2f0153c573358938fe9ffa84ab00cf9ac4 /PKGBUILD | |
| download | aur-8d6063d3c6d0227299b385da3448227ac2bf5d98.tar.gz | |
add r-rfastp
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 40 |
1 files changed, 40 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..159082de9936 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,40 @@ +# system requirements: GNU make +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=Rfastp +_pkgver=1.6.0 +pkgname=r-${_pkgname,,} +pkgver=1.6.0 +pkgrel=1 +pkgdesc='An Ultra-Fast and All-in-One Fastq Preprocessor (Quality Control, Adapter, low quality and polyX trimming) and UMI Sequence Parsing).' +arch=('x86_64') +url="https://bioconductor.org/packages/${_pkgname}" +license=('GPL') +depends=( + r + r-ggplot2 + r-rcpp + r-reshape2 + r-rhtslib + r-rjson + r-zlibbioc + make +) +optdepends=( + r-biocstyle + r-knitr + r-rmarkdown + r-testthat +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('9784da7fd4d1bc36d564dec46ab57f75594d54801b8f825252e274517dabff1b') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |