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author | Sukanka | 2022-06-06 20:50:31 +0800 |
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committer | Sukanka | 2022-06-06 20:50:31 +0800 |
commit | 4feba0e6018d043e9cb475f1b0cb53811aca8303 (patch) | |
tree | 9f7941e05318969d9a49652154e2bbceeb2c279f /PKGBUILD | |
download | aur-4feba0e6018d043e9cb475f1b0cb53811aca8303.tar.gz |
add r-ripat
Diffstat (limited to 'PKGBUILD')
-rw-r--r-- | PKGBUILD | 39 |
1 files changed, 39 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..f956d6de0051 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,39 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=RIPAT +_pkgver=1.6.0 +pkgname=r-${_pkgname,,} +pkgver=1.6.0 +pkgrel=1 +pkgdesc='Retroviral Integration Pattern Analysis Tool (RIPAT)' +arch=('any') +url="https://bioconductor.org/packages/${_pkgname}" +license=('Artistic2.0') +depends=( + r + r-biomart + r-genomicranges + r-ggplot2 + r-iranges + r-karyoploter + r-openxlsx + r-plyr + r-regioner + r-rtracklayer + r-stringr +) +optdepends=( + r-knitr +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('262f3a905ee3c1168065aabc6d56d99ba9790b95bbc30974ad42bffd28091277') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |