add r-rlseq

1 files changed, 73 insertions, 0 deletions

diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..401da9528d12
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,73 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=RLSeq
+_pkgver=1.2.0
+pkgname=r-${_pkgname,,}
+pkgver=1.2.0
+pkgrel=1
+pkgdesc='RLSeq: An analysis package for R-loop mapping data'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('MIT')
+depends=(
+  r
+  r-annotationhub
+  r-aws.s3
+  r-callr
+  r-caretensemble
+  r-circlize
+  r-complexheatmap
+  r-dplyr
+  r-genomeinfodb
+  r-genomicfeatures
+  r-genomicranges
+  r-ggplot2
+  r-ggplotify
+  r-ggprism
+  r-pheatmap
+  r-rcolorbrewer
+  r-regioner
+  r-rlhub
+  r-rtracklayer
+  r-valr
+  r-venndiagram
+)
+optdepends=(
+  r-annotationdbi
+  r-biocstyle
+  r-covr
+  r-dt
+  r-futile.logger
+  r-httr
+  r-jsonlite
+  r-kableextra
+  r-kernlab
+  r-knitr
+  r-lintr
+  r-magick
+  r-mass
+  r-org.hs.eg.db
+  r-r.utils
+  r-randomforest
+  r-rcmdcheck
+  r-readr
+  r-rmarkdown
+  r-rpart
+  r-testthat
+  r-tibble
+  r-tidyr
+  r-txdb.hsapiens.ucsc.hg19.knowngene
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('0d6c65dbf791f8f7347d58c4e66004fefcc060d3f4994e3bea73ec0b13466a52')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
+}
+# vim:set ts=2 sw=2 et: