add r-rnaseqr

1 files changed, 59 insertions, 0 deletions

diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..d362a3b07191
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,59 @@
+# system requirements: RNASeqR only support Linux and macOS. Window is notsupported. Python2 is highly recommended. If your machine isPython3, make sure '2to3' command is available.
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=RNASeqR
+_pkgver=1.12.0
+pkgname=r-${_pkgname,,}
+pkgver=1.12.0
+pkgrel=2
+pkgdesc='RNASeqR: an R package for automated two-group RNA-Seq analysis workflow'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('Artistic2.0')
+depends=(
+  r
+  r-ballgown
+  r-biostrings
+  r-clusterprofiler
+  r-corrplot
+  r-deseq2
+  r-dose
+  r-edger
+  r-factoextra
+  r-factominer
+  r-ggplot2
+  r-gridextra
+  r-org.hs.eg.db
+  r-org.sc.sgd.db
+  r-pathview
+  r-performanceanalytics
+  r-pheatmap
+  r-rafalib
+  r-reshape2
+  r-reticulate
+  r-rsamtools
+  r-stringr
+  r-systempiper
+  r-systempiperdata
+  python2
+  python
+)
+optdepends=(
+  r-grid
+  r-knitr
+  r-png
+  r-rmarkdown
+  r-rnaseqrdata
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('25bf668244e24a52bc2a6425b4ea10f41674656d77fe6bfce3aaa245c9cc59b8')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: