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author | Sukanka | 2022-06-06 21:45:39 +0800 |
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committer | Sukanka | 2022-06-06 21:45:39 +0800 |
commit | 95d057e8f56691389fd6defbb8ed81e3ac886f82 (patch) | |
tree | 6f5123957933bea454366c7a43088f73fea9add4 /PKGBUILD | |
download | aur-95d057e8f56691389fd6defbb8ed81e3ac886f82.tar.gz |
add r-rtracklayer
Diffstat (limited to 'PKGBUILD')
-rw-r--r-- | PKGBUILD | 53 |
1 files changed, 53 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..6542809edb69 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,53 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=rtracklayer +_pkgver=1.56.0 +pkgname=r-${_pkgname,,} +pkgver=1.56.0 +pkgrel=1 +pkgdesc='R interface to genome annotation files and the UCSC genome browser' +arch=('x86_64') +url="https://bioconductor.org/packages/${_pkgname}" +license=('Artistic2.0') +depends=( + r + r-biocgenerics + r-biocio + r-biostrings + r-genomeinfodb + r-genomicalignments + r-genomicranges + r-iranges + r-rcurl + r-restfulr + r-rsamtools + r-s4vectors + r-xml + r-xvector + r-zlibbioc +) +optdepends=( + r-bsgenome + r-bsgenome.hsapiens.ucsc.hg19 + r-genefilter + r-genomicfeatures + r-hgu133plus2.db + r-humanstemcell + r-limma + r-microrna + r-org.hs.eg.db + r-runit + r-txdb.hsapiens.ucsc.hg19.knowngene +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('cd215e2e7c0c5ab27c037869289598a25b300537d7ee8181dc6ce6dcc3543ab5') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |